if all you are doing is swapping out the long block bottom end. There really should be no difference in the wiring.
Its hard to give advice on the wiring since you more or less gave a descripion of your situation, not the motor. Can you post a pic of the wires and locations you are confused about?
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2001 Trans Am WS6 •SLP Loudmouth II •UMI Suspension •12.857 @ 109.57
1996 Trans Am WS6 •Pacesetter Longtubes •Strange 12 Bolt •Spohn Suspension •11.152 @ 123.85
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